PH01000839G0630's details annotation
1.Annotation
ICBR annotation: U-box domain containing protein, expressed
Blast result AT3G18710 : 1.30E-26
Blast annotation: plant U-box 29
2.Location
Scaffold: PH01000839
Strand: +
| Region | Start | End |
| gene | 413574 | 416510 |
| mRNA | 413574 | 416510 |
| exon | 413574 | 414072 |
| exon | 414111 | 414872 |
| exon | 415448 | 416510 |
| CDS | 414007 | 414072 |
| CDS | 414111 | 414872 |
| CDS | 415448 | 415567 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000225 | RLK-Pelle_L-LEC (from iTAK) integral to membrane, |
| coexpression network | CFinderM000447 | CMGC_MAPK (from iTAK) C3H Transcription_Regulator(from PlantTFDB) ubiquitin ligase complex, extracellular region, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04564.14 | U-box | 101 | 169 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000151 | ubiquitin ligase complex |
| GO:0004842 | ubiquitin-protein ligase activity |
| GO:0016567 | protein ubiquitination |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.