PH01000840G0130's details annotation
1.Annotation
ICBR annotation: transporter-related, putative, expressed
Blast result AT4G39390 : 1.90E-54
Blast annotation: nucleotide sugar transporter-KT 1
2.Location
Scaffold: PH01000840
Strand: -
| Region | Start | End |
| gene | 77512 | 79824 |
| mRNA | 77512 | 79824 |
| exon | 77512 | 78308 |
| exon | 78971 | 79132 |
| exon | 79300 | 79824 |
| CDS | 77985 | 78308 |
| CDS | 78971 | 79132 |
| CDS | 79300 | 79302 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000772 | CAMK_CAMKL-CHK1 (from iTAK) integral to membrane, |
| coexpression network | CFinderM001373 | GTnc GlycosylTransferases phospholipid transport, cellular metabolic process, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.