PH01000840G0640's details annotation
1.Annotation
ICBR annotation: CDK5RAP3, putative, expressed
Blast result AT5G06830 : 1.00E-144
Blast annotation: -
2.Location
Scaffold: PH01000840
Strand: +
| Region | Start | End |
| gene | 452352 | 457180 |
| mRNA | 452352 | 457180 |
| exon | 452352 | 453325 |
| exon | 453827 | 453921 |
| exon | 454003 | 454097 |
| exon | 454204 | 454339 |
| exon | 454424 | 454573 |
| exon | 454674 | 455219 |
| exon | 455446 | 455654 |
| exon | 455842 | 455974 |
| exon | 456315 | 457180 |
| CDS | 453229 | 453325 |
| CDS | 453827 | 453921 |
| CDS | 454003 | 454097 |
| CDS | 454204 | 454339 |
| CDS | 454424 | 454573 |
| CDS | 454674 | 455219 |
| CDS | 455446 | 455654 |
| CDS | 455842 | 455974 |
| CDS | 456315 | 456455 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000415 | SOS_response DNA metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05600.11 | DUF773 | 31 | 518 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.