PH01000841G0080's details annotation
1.Annotation
ICBR annotation: MYB family transcription factor, putative, expressed
Blast result AT1G70000 : 9.10E-28
Blast annotation: myb-like transcription factor family protein
2.Location
Scaffold: PH01000841
Strand: +
| Region | Start | End |
| gene | 56284 | 59641 |
| mRNA | 56284 | 59641 |
| exon | 56284 | 56851 |
| exon | 57387 | 57610 |
| exon | 57698 | 57775 |
| exon | 57907 | 57954 |
| exon | 58035 | 59641 |
| CDS | 56386 | 56851 |
| CDS | 57387 | 57610 |
| CDS | 57698 | 57775 |
| CDS | 57907 | 57954 |
| CDS | 58035 | 58154 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000870 | cullin-RING ubiquitin ligase complex, folic acid-containing compound biosynthetic process, methylenetetrahydrofolate_dehydrogenase_(NADP+)_activity MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00249.30 | Myb_DNA-binding | 158 | 201 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.