PH01000841G0690's details annotation
1.Annotation
ICBR annotation: ternary complex factor MIP1, putative, expressed
Blast result AT5G47380 : 1.00E-115
Blast annotation: Protein of unknown function, DUF547
2.Location
Scaffold: PH01000841
Strand: +
| Region | Start | End |
| gene | 482713 | 487369 |
| mRNA | 482713 | 487369 |
| exon | 482713 | 483076 |
| exon | 483171 | 483252 |
| exon | 483358 | 483468 |
| exon | 483569 | 483685 |
| exon | 484148 | 484516 |
| exon | 484941 | 485293 |
| exon | 485350 | 485449 |
| exon | 485532 | 485591 |
| exon | 486231 | 486371 |
| exon | 486461 | 487369 |
| CDS | 482931 | 483076 |
| CDS | 483171 | 483252 |
| CDS | 483358 | 483468 |
| CDS | 483569 | 483685 |
| CDS | 484148 | 484516 |
| CDS | 484941 | 485293 |
| CDS | 485350 | 485449 |
| CDS | 485532 | 485591 |
| CDS | 486231 | 486371 |
| CDS | 486461 | 486817 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000019 | oxidoreductase activity, acting on CH-OH group of donors, metabolic process, folic acid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14389.5 | Lzipper-MIP1 | 104 | 184 |
| PF04784.13 | DUF547 | 407 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.