PH01000842G0670's details annotation
1.Annotation
ICBR annotation: rhoGAP domain containing protein, expressed
Blast result AT2G46710 : 2.00E-113
Blast annotation: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
2.Location
Scaffold: PH01000842
Strand: +
| Region | Start | End |
| gene | 489813 | 493968 |
| mRNA | 489813 | 493968 |
| exon | 489813 | 490429 |
| exon | 491193 | 491313 |
| exon | 491404 | 491523 |
| exon | 492167 | 492397 |
| exon | 492492 | 493968 |
| CDS | 490017 | 490429 |
| CDS | 491193 | 491313 |
| CDS | 491404 | 491523 |
| CDS | 492167 | 492397 |
| CDS | 492492 | 493034 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00786.27 | PBD | 98 | 126 |
| PF00620.26 | RhoGAP | 162 | 295 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005622 | intracellular |
| GO:0007165 | signal transduction |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.