Annotation of co-expression genes

PH01000844G0660's details annotation

1.Annotation

ICBR annotation: acyl-coenzyme A oxidase, putative, expressed

Blast result AT5G65110 : 2.00E-126
Blast annotation: acyl-CoA oxidase 2

2.Location

Scaffold: PH01000844
Strand: -

RegionStartEnd
gene488208494076
mRNA488208494076
exon488208488688
exon488788488911
exon489450489616
exon489694489873
exon490044490164
exon490747490891
exon492281492583
exon492809492924
exon493398494076
CDS488527488688
CDS488788488911
CDS489450489616
CDS489694489873
CDS490044490164
CDS490747490891
CDS492281492583
CDS492809492924
CDS493398493846

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02770.18Acyl-CoA_dh_M180290
PF01756.18ACOX429572

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003995acyl-CoA dehydrogenase activity
GO:0003997acyl-CoA oxidase activity
GO:0005777peroxisome
GO:0006631fatty acid metabolic process
GO:0006635fatty acid beta-oxidation
GO:0008152metabolic process
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
GO:0050660flavin adenine dinucleotide binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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