PH01000845G0110's details annotation
1.Annotation
ICBR annotation: OsFBT6 - F-box and tubby domain containing protein, expressed
Blast result AT1G25280 : 1.00E-149
Blast annotation: tubby like protein 10
2.Location
Scaffold: PH01000845
Strand: +
| Region | Start | End |
| gene | 64708 | 70672 |
| mRNA | 64708 | 70672 |
| exon | 64708 | 65243 |
| exon | 65444 | 65556 |
| exon | 67813 | 67886 |
| exon | 67937 | 68423 |
| exon | 68669 | 68756 |
| exon | 69520 | 69652 |
| exon | 69757 | 70672 |
| CDS | 64985 | 65243 |
| CDS | 65444 | 65556 |
| CDS | 67813 | 67886 |
| CDS | 67937 | 68423 |
| CDS | 68669 | 68756 |
| CDS | 69520 | 69652 |
| CDS | 69757 | 70546 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 247 | 300 |
| PF01167.17 | Tub | 311 | 642 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.