PH01000845G0520's details annotation
1.Annotation
ICBR annotation: POT family protein, expressed
Blast result AT1G22540 : 1.00E-53
Blast annotation: Major facilitator superfamily protein
2.Location
Scaffold: PH01000845
Strand: +
| Region | Start | End |
| gene | 358854 | 363161 |
| mRNA | 358854 | 363161 |
| exon | 358854 | 359214 |
| exon | 359310 | 359527 |
| exon | 361828 | 362124 |
| exon | 362768 | 363161 |
| CDS | 359076 | 359214 |
| CDS | 359310 | 359527 |
| CDS | 361828 | 362124 |
| CDS | 362768 | 363085 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001342 | |
| coexpression network | CFinderM001654 | WNK_NRBP (from iTAK) RNA_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00854.20 | PTR2 | 107 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.