Annotation of co-expression genes

PH01000847G0190's details annotation

1.Annotation

ICBR annotation: 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed

Blast result AT3G14270 : 0
Blast annotation: phosphatidylinositol-4-phosphate 5-kinase family protein

2.Location

Scaffold: PH01000847
Strand: +

RegionStartEnd
gene129854140526
mRNA129854140526
exon129854130961
exon131287131994
exon132079132232
exon132304132639
exon132872133699
exon133800134131
exon134214134340
exon134454134612
exon134713136212
exon136303136569
exon137449137666
exon137827137931
exon138664138868
exon138986140526
CDS130690130961
CDS131287131994
CDS132079132232
CDS132304132639
CDS132872133699
CDS133800134131
CDS134214134340
CDS134454134612
CDS134713136212
CDS136303136569
CDS137449137666
CDS137827137931
CDS138664138868
CDS138986139498

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00118.23Cpn60_TCP1276522
PF01504.17PIP5K14121578
PF00538.18Linker_histone17331793

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000786nucleosome
GO:0003677DNA binding
GO:0005524ATP binding
GO:0005634nucleus
GO:0006334nucleosome assembly
GO:0016307phosphatidylinositol phosphate kinase activity
GO:0044267cellular protein metabolic process
GO:0046488phosphatidylinositol metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.