PH01000847G0680's details annotation
1.Annotation
ICBR annotation: dehydrogenase, putative, expressed
Blast result AT4G37980 : 8.00E-116
Blast annotation: elicitor-activated gene 3-1
2.Location
Scaffold: PH01000847
Strand: +
| Region | Start | End |
| gene | 484858 | 488290 |
| mRNA | 484858 | 488290 |
| exon | 484858 | 485633 |
| exon | 486678 | 486827 |
| exon | 487342 | 487738 |
| exon | 487906 | 488012 |
| exon | 488171 | 488290 |
| CDS | 485431 | 485633 |
| CDS | 486678 | 486827 |
| CDS | 487342 | 487738 |
| CDS | 487906 | 488012 |
| CDS | 488171 | 488174 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08240.11 | ADH_N | 33 | 147 |
| PF00107.25 | ADH_zinc_N | 189 | 310 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phenylpropanoid biosynthesis | cinnamyl-alcohol dehydrogenase [EC:1.1.1.195] | ko00940 | K00083 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0016747 | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.