Annotation of co-expression genes

PH01000848G0240's details annotation

1.Annotation

ICBR annotation: Kinesin motor domain domain containing protein, expressed

Blast result AT3G20150 : 3.80E-72
Blast annotation: Kinesin motor family protein

2.Location

Scaffold: PH01000848
Strand: -

RegionStartEnd
gene170092177038
mRNA170092177038
exon170092172036
exon172143172877
exon173516173614
exon173686173877
exon174028174034
exon174528174673
exon174913175008
exon175383175475
exon175565175618
exon175730175789
exon175883176008
exon176101176184
exon176296176439
exon176540177038
CDS171791172036
CDS172143172877
CDS173516173614
CDS173686173877
CDS174028174034
CDS174528174673
CDS174913175008
CDS175383175475
CDS175565175618
CDS175730175789
CDS175883176008
CDS176101176184
CDS176296176439
CDS176540176827

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00225.22Kinesin120365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0005875microtubule associated complex
GO:0007018microtubule-based movement

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.