PH01000853G0020's details annotation
1.Annotation
ICBR annotation: lissencephaly type-1-like homology motif, putative, expressed
Blast result AT1G80490 : 0
Blast annotation: TOPLESS-related 1
2.Location
Scaffold: PH01000853
Strand: +
| Region | Start | End |
| gene | 9899 | 26165 |
| mRNA | 9899 | 26165 |
| exon | 9899 | 10511 |
| exon | 10608 | 10787 |
| exon | 10874 | 10987 |
| exon | 11087 | 11245 |
| exon | 12332 | 12512 |
| exon | 12588 | 12714 |
| exon | 12806 | 12915 |
| exon | 13014 | 13079 |
| exon | 13465 | 13541 |
| exon | 14255 | 14323 |
| exon | 14631 | 14811 |
| exon | 14887 | 15013 |
| exon | 15104 | 15189 |
| exon | 15803 | 15872 |
| exon | 16021 | 16094 |
| exon | 16189 | 16356 |
| exon | 16436 | 16531 |
| exon | 16816 | 16943 |
| exon | 17127 | 17361 |
| exon | 17598 | 17633 |
| exon | 18703 | 18810 |
| exon | 18889 | 19035 |
| exon | 19362 | 19472 |
| exon | 19560 | 19739 |
| exon | 19975 | 20103 |
| exon | 20459 | 20540 |
| exon | 21056 | 21318 |
| exon | 21406 | 21573 |
| exon | 21890 | 21997 |
| exon | 22076 | 22222 |
| exon | 22548 | 22658 |
| exon | 22746 | 22925 |
| exon | 23159 | 23287 |
| exon | 23648 | 23743 |
| exon | 24641 | 24826 |
| exon | 25005 | 25177 |
| exon | 25283 | 26165 |
| CDS | 10432 | 10511 |
| CDS | 10608 | 10787 |
| CDS | 10874 | 10987 |
| CDS | 11087 | 11245 |
| CDS | 12332 | 12512 |
| CDS | 12588 | 12714 |
| CDS | 12806 | 12915 |
| CDS | 13014 | 13079 |
| CDS | 13465 | 13541 |
| CDS | 14255 | 14323 |
| CDS | 14631 | 14811 |
| CDS | 14887 | 15013 |
| CDS | 15104 | 15189 |
| CDS | 15803 | 15872 |
| CDS | 16021 | 16094 |
| CDS | 16189 | 16356 |
| CDS | 16436 | 16531 |
| CDS | 16816 | 16943 |
| CDS | 17127 | 17361 |
| CDS | 17598 | 17633 |
| CDS | 18703 | 18810 |
| CDS | 18889 | 19035 |
| CDS | 19362 | 19472 |
| CDS | 19560 | 19739 |
| CDS | 19975 | 20103 |
| CDS | 20459 | 20540 |
| CDS | 21056 | 21318 |
| CDS | 21406 | 21573 |
| CDS | 21890 | 21997 |
| CDS | 22076 | 22222 |
| CDS | 22548 | 22658 |
| CDS | 22746 | 22925 |
| CDS | 23159 | 23287 |
| CDS | 23648 | 23743 |
| CDS | 24641 | 24826 |
| CDS | 25005 | 25177 |
| CDS | 25283 | 25499 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 593 | 626 |
| PF00400.31 | WD40 | 1413 | 1446 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.