PH01000854G0600's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G27850 : 1.00E-56
Blast annotation: -
2.Location
Scaffold: PH01000854
Strand: +
| Region | Start | End |
| gene | 454189 | 461870 |
| mRNA | 454189 | 461870 |
| exon | 454189 | 454687 |
| exon | 454865 | 455227 |
| exon | 455493 | 455546 |
| exon | 456361 | 456388 |
| exon | 456808 | 456904 |
| exon | 457941 | 458064 |
| exon | 458163 | 458912 |
| exon | 459578 | 461870 |
| CDS | 454565 | 454687 |
| CDS | 454865 | 455227 |
| CDS | 455493 | 455546 |
| CDS | 456361 | 456388 |
| CDS | 456808 | 456904 |
| CDS | 457941 | 458064 |
| CDS | 458163 | 458912 |
| CDS | 459578 | 461557 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001211 | zinc ion transmembrane transporter activity, binding, metal ion transmembrane transporter activity, zinc_ion_transmembrane_transport cysteine-type peptidase activity, |
| coexpression network | CFinderM001537 | vacuolar proton-transporting V-type ATPase, V1 domain, ATP hydrolysis coupled proton transport, MYB_related Transcription_Regulator(from PlantTFDB) RLK-Pelle_RLCK-VIIa-2 (from iTAK) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.