Annotation of co-expression genes

PH01000855G0230's details annotation

1.Annotation

ICBR annotation: nuclear transcription factor Y subunit, putative, expressed

Blast result AT5G06510 : 1.30E-28
Blast annotation: nuclear factor Y, subunit A10

2.Location

Scaffold: PH01000855
Strand: -

RegionStartEnd
gene195874199429
mRNA195874199429
exon195874196491
exon196674197039
exon197117197263
exon197490197558
exon197650197759
exon198866199429
CDS196471196491
CDS196674197039
CDS197117197263
CDS197490197558
CDS197650197759
CDS198866199178

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000469CCAAT-binding factor complex,
NF-YA Transcription_Regulator(from PlantTFDB)
response to biotic stimulus,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)NF-YA
Transcription_Regulator(from PlantTFDB)NF-YA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02045.14CBFB_NFYA185241

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0016602CCAAT-binding factor complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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