Annotation of co-expression genes

PH01000855G0430's details annotation

1.Annotation

ICBR annotation: glutaredoxin, putative, expressed

Blast result AT3G11773 : 3.80E-26
Blast annotation: Thioredoxin superfamily protein

2.Location

Scaffold: PH01000855
Strand: +

RegionStartEnd
gene350884354114
mRNA350884354114
exon350884352148
exon352653352745
exon352870353075
exon353472354114
CDS351406352148
CDS352653352745
CDS352870353075
CDS353472353794

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000285ABC_transporters
coexpression networkCFinderM000514cell redox homeostasis,
protein disulfide oxidoreductase activity,
nitrogen compound metabolic process,
electron carrier activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
coexpression networkCFinderM000516oligopeptide transport,
nitrogen compound metabolic process,
coexpression networkCFinderM001538oligopeptide transport,
transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00462.23Glutaredoxin109173

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0009055electron carrier activity
GO:0015035protein disulfide oxidoreductase activity
GO:0045454cell redox homeostasis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.