Annotation of co-expression genes

PH01000856G0550's details annotation

1.Annotation

ICBR annotation: rab GDP dissociation inhibitor alpha, putative, expressed

Blast result AT2G44100 : 0.00E+00
Blast annotation: guanosine nucleotide diphosphate dissociation inhibitor 1

2.Location

Scaffold: PH01000856
Strand: -

RegionStartEnd
gene371229376915
mRNA371229376915
exon371229371836
exon372132372206
exon372287372497
exon372821372828
exon372932373033
exon373117373179
exon373251373331
exon373581373692
exon374079374251
exon374411374518
exon374966375169
exon375667375750
exon376686376915
CDS371783371836
CDS372132372206
CDS372287372497
CDS372821372828
CDS372932373033
CDS373117373179
CDS373251373331
CDS373581373692
CDS374079374251
CDS374411374518
CDS374966375169
CDS375667375750
CDS376686376772

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001421protein catabolic process,
Proteasome
Glycine,_serine_and_threonine_metabolism
protein phosphatase type 2A complex,
cytoplasm,
protein phosphatase type 2A regulator activity,
Rab GDP-dissociation inhibitor activity,
nucleoside-triphosphatase activity,
hydrolase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00996.17GDI1433

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005093Rab GDP-dissociation inhibitor activity
GO:0015031protein transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.