Gene details

Annotation of co-expression genes

PH01000857G0610's details annotation

1.Annotation

ICBR annotation: RNA pseudouridine synthase, putative, expressed

Blast result AT3G52260 : 4.00E-113
Blast annotation: Pseudouridine synthase family protein

2.Location

Scaffold: PH01000857
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000840	vesicle docking involved in exocytosis, RNA modification, pseudouridine synthesis, translational initiation, RNA_transport pseudouridine synthase activity, translation initiation factor activity, vesicle-mediated transport,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00849.21	PseudoU_synth_2	116	296

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
GO:0001522	pseudouridine synthesis
GO:0003723	RNA binding
GO:0009451	RNA modification
GO:0009982	pseudouridine synthase activity

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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