PH01000860G0480's details annotation
1.Annotation
ICBR annotation: OsSub19 - Putative Subtilisin homologue, expressed
Blast result AT4G20850 : 6.00E-108
Blast annotation: tripeptidyl peptidase ii
2.Location
Scaffold: PH01000860
Strand: -
| Region | Start | End |
| gene | 302123 | 305117 |
| mRNA | 302123 | 305117 |
| exon | 302123 | 302308 |
| exon | 302551 | 302668 |
| exon | 302755 | 302855 |
| exon | 302928 | 303056 |
| exon | 303182 | 303352 |
| exon | 303427 | 303539 |
| exon | 304202 | 304380 |
| exon | 305039 | 305117 |
| CDS | 302273 | 302308 |
| CDS | 302551 | 302668 |
| CDS | 302755 | 302855 |
| CDS | 302928 | 303056 |
| CDS | 303182 | 303352 |
| CDS | 303427 | 303539 |
| CDS | 304202 | 304380 |
| CDS | 305039 | 305094 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000994 | aminoacyl-tRNA_editing_activity metallopeptidase activity, |
| coexpression network | CFinderM001028 | peptide-methionine_(R)-S-oxide_reductase_activity metallopeptidase activity, Ubiquitin_mediated_proteolysis acid-amino acid ligase activity, |
| coexpression network | CFinderM001743 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12580.7 | TPPII | 202 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.