Annotation of co-expression genes

PH01000860G0660's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT3G05090 : 0.00E+00
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01000860
Strand: +

RegionStartEnd
gene398908418232
mRNA398908418232
exon398908400853
exon400987401949
exon402678404170
exon404945405110
exon405856406160
exon406549407349
exon407990408073
exon408159408215
exon408878408994
exon414568414717
exon414838414922
exon414992415116
exon415705416071
exon416777417195
exon417289417411
exon417789418232
CDS400247400853
CDS400987401949
CDS402678404170
CDS404945405110
CDS405856406160
CDS406549407349
CDS407990408073
CDS408159408215
CDS408878408994
CDS414568414717
CDS414838414922
CDS414992415116
CDS415705416071
CDS416777417195
CDS417289417411
CDS417789417881

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000865polysaccharide_binding
coexpression networkCFinderM001125polysaccharide_binding

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD40600631
PF00400.31WD40638673
PF00400.31WD40678713
PF13947.5GUB_WAK_bind10221069
PF02138.17Beach14921652

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0030247polysaccharide binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.