PH01000866G0080's details annotation
1.Annotation
ICBR annotation: GPI mannosyltransferase 2, putative, expressed
Blast result AT1G11880 : 1.00E-136
Blast annotation: transferases, transferring hexosyl groups
2.Location
Scaffold: PH01000866
Strand: +
| Region | Start | End |
| gene | 50935 | 55072 |
| mRNA | 50935 | 55072 |
| exon | 50935 | 51497 |
| exon | 51593 | 51698 |
| exon | 52349 | 52441 |
| exon | 52532 | 52727 |
| exon | 52922 | 53100 |
| exon | 53638 | 53891 |
| exon | 54176 | 54354 |
| exon | 54455 | 55072 |
| CDS | 51200 | 51497 |
| CDS | 51593 | 51698 |
| CDS | 52349 | 52441 |
| CDS | 52532 | 52727 |
| CDS | 52922 | 53100 |
| CDS | 53638 | 53891 |
| CDS | 54176 | 54354 |
| CDS | 54455 | 54625 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT76 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04188.12 | Mannosyl_trans2 | 10 | 491 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycosylphosphatidylinositol(GPI)-anchor biosynthesis | phosphatidylinositol glycan, class V [EC:2.4.1.-] | ko00563 | K07542 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006506 | GPI anchor biosynthetic process |
| GO:0016758 | transferase activity, transferring hexosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.