PH01000866G0390's details annotation
1.Annotation
ICBR annotation: Os1bglu5 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed
Blast result AT1G02850 : 1.00E-107
Blast annotation: beta glucosidase 11
2.Location
Scaffold: PH01000866
Strand: -
| Region | Start | End |
| gene | 274914 | 279540 |
| mRNA | 274914 | 279540 |
| exon | 274914 | 275623 |
| exon | 275895 | 276001 |
| exon | 276188 | 276216 |
| exon | 276701 | 276915 |
| exon | 277008 | 277210 |
| exon | 277378 | 277636 |
| exon | 277763 | 277850 |
| exon | 277939 | 278029 |
| exon | 278309 | 278367 |
| exon | 278417 | 279540 |
| CDS | 275392 | 275623 |
| CDS | 275895 | 276001 |
| CDS | 276188 | 276216 |
| CDS | 276701 | 276915 |
| CDS | 277008 | 277210 |
| CDS | 277378 | 277636 |
| CDS | 277763 | 277850 |
| CDS | 277939 | 278029 |
| CDS | 278309 | 278367 |
| CDS | 278417 | 278468 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001365 | HSF Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) GT47 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00232.17 | Glyco_hydro_1 | 42 | 194 |
| PF00232.17 | Glyco_hydro_1 | 212 | 367 |
| PF00232.17 | Glyco_hydro_1 | 369 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.