PH01000872G0030's details annotation
1.Annotation
ICBR annotation: Lg106, putative, expressed
Blast result AT5G64130 : 1.10E-27
Blast annotation: cAMP-regulated phosphoprotein 19-related protein
2.Location
Scaffold: PH01000872
Strand: -
| Region | Start | End |
| gene | 10556 | 12563 |
| mRNA | 10556 | 12563 |
| exon | 10556 | 11457 |
| exon | 11530 | 11602 |
| exon | 11903 | 11962 |
| exon | 12046 | 12093 |
| exon | 12237 | 12299 |
| exon | 12487 | 12563 |
| CDS | 11363 | 11457 |
| CDS | 11530 | 11602 |
| CDS | 11903 | 11962 |
| CDS | 12046 | 12093 |
| CDS | 12237 | 12299 |
| CDS | 12487 | 12555 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04667.16 | Endosulfine | 37 | 109 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.