PH01000872G0050's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase, putative, expressed
Blast result AT2G42960 : 8.00E-151
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000872
Strand: +
| Region | Start | End |
| gene | 44359 | 47713 |
| mRNA | 44359 | 47713 |
| exon | 44359 | 44710 |
| exon | 45433 | 45961 |
| exon | 46035 | 46115 |
| exon | 46473 | 46595 |
| exon | 46725 | 46895 |
| exon | 46997 | 47126 |
| exon | 47208 | 47417 |
| exon | 47575 | 47713 |
| CDS | 44683 | 44710 |
| CDS | 45433 | 45961 |
| CDS | 46035 | 46115 |
| CDS | 46473 | 46595 |
| CDS | 46725 | 46895 |
| CDS | 46997 | 47126 |
| CDS | 47208 | 47417 |
| CDS | 47575 | 47661 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000815 | GH28 Glycoside_Hydrolases RLK-Pelle_RLCK-V (from iTAK) ATP biosynthetic process, ATP_catabolic_process Oxidative_phosphorylation metal ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 152 | 413 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.