Annotation of co-expression genes

PH01000873G0200's details annotation

1.Annotation

ICBR annotation: NADPH reductase, putative, expressed

Blast result AT4G30210 : 0.00E+00
Blast annotation: P450 reductase 2

2.Location

Scaffold: PH01000873
Strand: +

RegionStartEnd
gene180904186353
mRNA180904186353
exon180904181416
exon182243182302
exon182401182477
exon182769182910
exon183020183056
exon183139183208
exon183308183499
exon183605183697
exon184043184271
exon184362184445
exon184537184688
exon184774184870
exon185397185546
exon185635185712
exon185804185926
exon186020186133
exon186253186353
CDS181084181416
CDS182243182302
CDS182401182477
CDS182769182910
CDS183020183056
CDS183139183208
CDS183308183499
CDS183605183697
CDS184043184271
CDS184362184445
CDS184537184688
CDS184774184870
CDS185397185546
CDS185635185712
CDS185804185926
CDS186020186133
CDS186253186333

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00258.24Flavodoxin_197240
PF00667.19FAD_binding_1298520
PF00175.20NAD_binding_1557668

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003958NADPH-hemoprotein reductase activity
GO:0005506iron ion binding
GO:0010181FMN binding
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.