PH01000877G0230's details annotation
1.Annotation
ICBR annotation: OsFBT12 - F-box and tubby domain containing protein, expressed
Blast result AT1G25280 : 7.40E-52
Blast annotation: tubby like protein 10
2.Location
Scaffold: PH01000877
Strand: -
| Region | Start | End |
| gene | 180456 | 183557 |
| mRNA | 180456 | 183557 |
| exon | 180456 | 180795 |
| exon | 180961 | 181616 |
| exon | 183002 | 183557 |
| CDS | 180606 | 180795 |
| CDS | 180961 | 181616 |
| CDS | 183002 | 183367 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000281 | fatty-acyl-CoA_biosynthetic_process metabolic process, lipid metabolic process, Valine,_leucine_and_isoleucine_degradation TUB Transcription_Regulator(from iTAK) STE_STE11 (from iTAK) dihydrolipoyllysine-residue_(2-methylpropanoyl)transferase_activity alpha-Linolenic_acid_metabolism Linoleic_acid_metabolism Steroid_biosynthesis Arachidonic_acid_metabolism Ether_lipid_metabolism biotin_carboxylase_activity Glycerolipid_metabolism |
| coexpression network | CFinderM000290 | autophagy, Valine,_leucine_and_isoleucine_degradation Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00646.32 | F-box | 59 | 111 |
| PF01167.17 | Tub | 144 | 342 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.