PH01000877G0650's details annotation
1.Annotation
ICBR annotation: tRNA-splicing endonuclease positive effector-related, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000877
Strand: +
| Region | Start | End |
| gene | 466397 | 474545 |
| mRNA | 466397 | 474545 |
| exon | 466397 | 467117 |
| exon | 467770 | 468249 |
| exon | 468546 | 468806 |
| exon | 471997 | 472566 |
| exon | 473231 | 474545 |
| CDS | 466500 | 467117 |
| CDS | 467770 | 468249 |
| CDS | 468546 | 468806 |
| CDS | 471997 | 472566 |
| CDS | 473231 | 473257 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000398 | protein neddylation, exocyst, apoplast, cellular protein modification process, exocytosis, Ubiquitin_mediated_proteolysis cysteine-type endopeptidase activity, small protein activating enzyme activity, |
| coexpression network | CFinderM000663 | protein neddylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) chromosome, DNA topological change, DNA metabolic process, apoplast, cellular protein modification process, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, DNA topoisomerase (ATP-hydrolyzing) activity, |
| coexpression network | CFinderM000664 | apoplast, manganese ion binding, cysteine-type endopeptidase activity, nutrient reservoir activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.