Annotation of co-expression genes

PH01000878G0080's details annotation

1.Annotation

ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed

Blast result AT3G21250 : 0.00E+00
Blast annotation: multidrug resistance-associated protein 6

2.Location

Scaffold: PH01000878
Strand: +

RegionStartEnd
gene8368392616
mRNA8368392616
exon8368386251
exon8634086700
exon8675186821
exon8689587497
exon8758387747
exon8909689390
exon8949389707
exon8980090105
exon9026790330
exon9044690685
exon9082690885
exon9143192616
CDS8433886251
CDS8634086700
CDS8675186821
CDS8689587497
CDS8758387747
CDS8909689390
CDS8949389707
CDS8980090105
CDS9026790330
CDS9044690685
CDS9082690885
CDS9143191837

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane299533
PF00005.26ABC_tran598732
PF00664.22ABC_membrane8861150
PF00005.26ABC_tran12191367

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.