PH01000880G0130's details annotation
1.Annotation
ICBR annotation: LSTK-1-like kinase, putative, expressed
Blast result AT5G28290 : 6.00E-114
Blast annotation: NIMA-related kinase 3
2.Location
Scaffold: PH01000880
Strand: +
| Region | Start | End |
| gene | 117040 | 122753 |
| mRNA | 117040 | 122753 |
| exon | 117040 | 118492 |
| exon | 118605 | 118671 |
| exon | 118961 | 119026 |
| exon | 119270 | 119316 |
| exon | 119412 | 119457 |
| exon | 119550 | 119630 |
| exon | 119717 | 119759 |
| exon | 119848 | 119978 |
| exon | 120855 | 121292 |
| exon | 121682 | 122753 |
| CDS | 118407 | 118492 |
| CDS | 118605 | 118671 |
| CDS | 118961 | 119026 |
| CDS | 119270 | 119316 |
| CDS | 119412 | 119457 |
| CDS | 119550 | 119630 |
| CDS | 119717 | 119759 |
| CDS | 119848 | 119978 |
| CDS | 120855 | 121292 |
| CDS | 121682 | 122257 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 4 | 158 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.