PH01000881G0320's details annotation
1.Annotation
ICBR annotation: ATP-binding region, ATPase-like domain containing protein, expressed
Blast result AT1G19100 : 2.00E-148
Blast annotation: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
2.Location
Scaffold: PH01000881
Strand: -
| Region | Start | End |
| gene | 210538 | 223188 |
| mRNA | 210538 | 223188 |
| exon | 210538 | 210753 |
| exon | 210924 | 211130 |
| exon | 211561 | 211603 |
| exon | 212147 | 212223 |
| exon | 212794 | 212879 |
| exon | 212948 | 213165 |
| exon | 215169 | 215280 |
| exon | 215376 | 215427 |
| exon | 215969 | 216061 |
| exon | 217013 | 217115 |
| exon | 217252 | 217358 |
| exon | 218839 | 218937 |
| exon | 219370 | 219504 |
| exon | 219624 | 219702 |
| exon | 220973 | 221048 |
| exon | 221138 | 221227 |
| exon | 221323 | 221401 |
| exon | 221498 | 221532 |
| exon | 222193 | 222267 |
| exon | 222396 | 223188 |
| CDS | 210658 | 210753 |
| CDS | 210924 | 211130 |
| CDS | 211561 | 211603 |
| CDS | 212147 | 212223 |
| CDS | 212794 | 212879 |
| CDS | 212948 | 213165 |
| CDS | 215169 | 215280 |
| CDS | 215376 | 215427 |
| CDS | 215969 | 216061 |
| CDS | 217013 | 217115 |
| CDS | 217252 | 217358 |
| CDS | 218839 | 218937 |
| CDS | 219370 | 219504 |
| CDS | 219624 | 219702 |
| CDS | 220973 | 221048 |
| CDS | 221138 | 221227 |
| CDS | 221323 | 221401 |
| CDS | 221498 | 221532 |
| CDS | 222193 | 222267 |
| CDS | 222396 | 222738 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001807 | GT31 GlycosylTransferases SNF2 Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13589.5 | HATPase_c_3 | 139 | 232 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.