Annotation of co-expression genes

PH01000881G0350's details annotation

1.Annotation

ICBR annotation: phox domain-containing protein, putative, expressed

Blast result AT3G48195 : 5.00E-144
Blast annotation: Phox (PX) domain-containing protein

2.Location

Scaffold: PH01000881
Strand: -

RegionStartEnd
gene238233241827
mRNA238233241827
exon238233238805
exon238963239261
exon239344239486
exon240157240382
exon240531241827
CDS238613238805
CDS238963239261
CDS239344239486
CDS240157240382
CDS240531241517

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000577COP9_signalosome
exosome_(RNase_complex)
cell communication,
RNA_degradation
phosphatidylinositol binding,
coexpression networkCFinderM000655cell communication,
coexpression networkCFinderM001547CMGC_CLK (from iTAK)
exosome_(RNase_complex)
cell communication,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00787.23PX79162
PF13901.5zf-RING_9279480

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0007154cell communication
GO:0035091phosphatidylinositol binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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