Annotation of co-expression genes

PH01000882G0150's details annotation

1.Annotation

ICBR annotation: NOC3 - Putative nucleolar complex subunit 3, expressed

Blast result AT1G79150 : 2.00E-144
Blast annotation: binding

2.Location

Scaffold: PH01000882
Strand: -

RegionStartEnd
gene113716122977
mRNA113716122977
exon113716114460
exon114546114643
exon115724115863
exon116378116692
exon116858116994
exon117070117240
exon117381117519
exon118521118729
exon119226119354
exon119564119666
exon119754119962
exon120560120750
exon121930122977
CDS113945114460
CDS114546114643
CDS115724115863
CDS116378116692
CDS116858116994
CDS117070117240
CDS117381117519
CDS118521118729
CDS119226119354
CDS119564119666
CDS119754119962
CDS120560120750
CDS121930122281

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
coexpression networkCFinderM001310mRNA_surveillance_pathway
binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07540.10NOC3p197287
PF07540.10NOC3p344397
PF03914.16CBF613768

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005488binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.