Annotation of co-expression genes

PH01000883G0370's details annotation

1.Annotation

ICBR annotation: WAX2, putative, expressed

Blast result AT5G57800 : 0.00E+00
Blast annotation: Fatty acid hydroxylase superfamily

2.Location

Scaffold: PH01000883
Strand: -

RegionStartEnd
gene247058252361
mRNA247058252361
exon247058247834
exon247952248158
exon248303248410
exon248504248644
exon248714248778
exon249970250091
exon251082251301
exon251398251630
exon251741251961
exon252090252361
CDS247394247834
CDS247952248158
CDS248303248410
CDS248504248644
CDS248714248778
CDS249970250091
CDS251082251301
CDS251398251630
CDS251741251961
CDS252090252143

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001260hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
nitrogen compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04116.12FA_hydroxylase129269
PF12076.7Wax2_C432602

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005506iron ion binding
GO:0006633fatty acid biosynthetic process
GO:0016491oxidoreductase activity
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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