PH01000884G0210's details annotation
1.Annotation
ICBR annotation: cycloartenol synthase, putative, expressed
Blast result AT2G07050 : 6.30E-66
Blast annotation: cycloartenol synthase 1
2.Location
Scaffold: PH01000884
Strand: +
| Region | Start | End |
| gene | 168623 | 171048 |
| mRNA | 168623 | 171048 |
| exon | 168623 | 168870 |
| exon | 169166 | 169250 |
| exon | 169466 | 169632 |
| exon | 170432 | 170620 |
| exon | 170814 | 171048 |
| CDS | 168718 | 168870 |
| CDS | 169166 | 169250 |
| CDS | 169466 | 169632 |
| CDS | 170432 | 170620 |
| CDS | 170814 | 170867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13249.5 | SQHop_cyclase_N | 7 | 193 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.