PH01000885G0530's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G69980 : 1.00E-21
Blast annotation: -
2.Location
Scaffold: PH01000885
Strand: +
| Region | Start | End |
| gene | 349851 | 353994 |
| mRNA | 349851 | 353994 |
| exon | 349851 | 350265 |
| exon | 352640 | 352849 |
| exon | 353200 | 353272 |
| exon | 353500 | 353994 |
| CDS | 350017 | 350265 |
| CDS | 352640 | 352849 |
| CDS | 353200 | 353272 |
| CDS | 353500 | 353606 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000222 | signal recognition particle, acetyl-CoA_biosynthetic_process_from_pyruvate RLK-Pelle_LRR-XI-1 (from iTAK) SRP-dependent cotranslational protein targeting to membrane, pyruvate dehydrogenase (acetyl-transferring) activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.