PH01000886G0290's details annotation
1.Annotation
ICBR annotation: resistance protein, putative, expressed
Blast result AT3G07040 : 1.20E-54
Blast annotation: NB-ARC domain-containing disease resistance protein
2.Location
Scaffold: PH01000886
Strand: -
| Region | Start | End |
| gene | 189217 | 194806 |
| mRNA | 189217 | 194806 |
| exon | 189217 | 191565 |
| exon | 191980 | 192079 |
| exon | 192184 | 192599 |
| exon | 193402 | 193530 |
| exon | 193604 | 193777 |
| exon | 194281 | 194363 |
| exon | 194458 | 194806 |
| CDS | 189697 | 191565 |
| CDS | 191980 | 192079 |
| CDS | 192184 | 192599 |
| CDS | 193402 | 193530 |
| CDS | 193604 | 193777 |
| CDS | 194281 | 194363 |
| CDS | 194458 | 194626 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 211 | 282 |
| PF00931.21 | NB-ARC | 323 | 472 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.