Annotation of co-expression genes

PH01000888G0110's details annotation

1.Annotation

ICBR annotation: ABC transporter, ATP-binding protein, putative, expressed

Blast result AT1G28010 : 0
Blast annotation: P-glycoprotein 14

2.Location

Scaffold: PH01000888
Strand: +

RegionStartEnd
gene7570282400
mRNA7570282400
exon7570276061
exon7620376257
exon7728177456
exon7757377773
exon7786078119
exon7823878551
exon7881579038
exon7947179823
exon8006880489
exon8060282400
CDS7585576061
CDS7620376257
CDS7728177456
CDS7757377773
CDS7786078119
CDS7823878551
CDS7881579038
CDS7947179823
CDS8006880489
CDS8060282082

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane27299
PF00005.26ABC_tran367515
PF00664.22ABC_membrane662924
PF00005.26ABC_tran9961145

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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