PH01000888G0290's details annotation
1.Annotation
ICBR annotation: BSD domain-containing protein, putative, expressed
Blast result AT1G55750 : 1.00E-96
Blast annotation: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
2.Location
Scaffold: PH01000888
Strand: +
| Region | Start | End |
| gene | 182316 | 193581 |
| mRNA | 182316 | 193581 |
| exon | 182316 | 182726 |
| exon | 183315 | 183393 |
| exon | 183717 | 183790 |
| exon | 183896 | 183959 |
| exon | 184387 | 184525 |
| exon | 185186 | 185261 |
| exon | 185364 | 185459 |
| exon | 185618 | 185662 |
| exon | 185711 | 185716 |
| exon | 186216 | 186719 |
| exon | 187098 | 187154 |
| exon | 187332 | 187487 |
| exon | 187598 | 187663 |
| exon | 187834 | 187957 |
| exon | 188931 | 188987 |
| exon | 189059 | 189189 |
| exon | 189283 | 189474 |
| exon | 189692 | 189799 |
| exon | 190936 | 191013 |
| exon | 191475 | 191543 |
| exon | 192508 | 192555 |
| exon | 192837 | 192905 |
| exon | 193213 | 193581 |
| CDS | 182652 | 182726 |
| CDS | 183315 | 183393 |
| CDS | 183717 | 183790 |
| CDS | 183896 | 183959 |
| CDS | 184387 | 184525 |
| CDS | 185186 | 185261 |
| CDS | 185364 | 185459 |
| CDS | 185618 | 185662 |
| CDS | 185711 | 185716 |
| CDS | 186216 | 186719 |
| CDS | 187098 | 187154 |
| CDS | 187332 | 187487 |
| CDS | 187598 | 187663 |
| CDS | 187834 | 187957 |
| CDS | 188931 | 188987 |
| CDS | 189059 | 189189 |
| CDS | 189283 | 189474 |
| CDS | 189692 | 189799 |
| CDS | 190936 | 191013 |
| CDS | 191475 | 191543 |
| CDS | 192508 | 192555 |
| CDS | 192837 | 192905 |
| CDS | 193213 | 193293 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03909.16 | BSD | 385 | 426 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIIH subunit 1 | ko03022 | K03141 |
| Nucleotide excision repair | transcription initiation factor TFIIH subunit 1 | ko03420 | K03141 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.