PH01000888G0660's details annotation
1.Annotation
ICBR annotation: MSP domain containing protein, expressed
Blast result AT4G00170 : 6.00E-51
Blast annotation: Plant VAMP (vesicle-associated membrane protein) family protein
2.Location
Scaffold: PH01000888
Strand: +
| Region | Start | End |
| gene | 480061 | 484238 |
| mRNA | 480061 | 484238 |
| exon | 480061 | 480539 |
| exon | 481301 | 481371 |
| exon | 481479 | 481560 |
| exon | 481680 | 481795 |
| exon | 481904 | 482065 |
| exon | 482182 | 482226 |
| exon | 483334 | 483411 |
| exon | 484113 | 484238 |
| CDS | 480482 | 480539 |
| CDS | 481301 | 481371 |
| CDS | 481479 | 481560 |
| CDS | 481680 | 481795 |
| CDS | 481904 | 482065 |
| CDS | 482182 | 482226 |
| CDS | 483334 | 483411 |
| CDS | 484113 | 484223 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000236 | NAK (from iTAK) STAT Transcription_Regulator(from PlantTFDB) Glycine,_serine_and_threonine_metabolism magnesium_ion_transport TKL-Pl-5 (from iTAK) magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001728 | NAK (from iTAK) vacuolar_proton-transporting_V-type_ATPase,_V0_domain proton-transporting V-type ATPase, V0 domain, exocyst, ATP hydrolysis coupled proton transport, exocytosis, Oxidative_phosphorylation Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00635.25 | Motile_Sperm | 76 | 179 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.