PH01000889G0670's details annotation
1.Annotation
ICBR annotation: ATP-binding region, ATPase-like domain containing protein, expressed
Blast result AT5G50780 : 6.00E-105
Blast annotation: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
2.Location
Scaffold: PH01000889
Strand: -
| Region | Start | End |
| gene | 482914 | 491867 |
| mRNA | 482914 | 491867 |
| exon | 482914 | 483093 |
| exon | 483161 | 483223 |
| exon | 483319 | 483441 |
| exon | 484156 | 484231 |
| exon | 485183 | 485280 |
| exon | 486085 | 486440 |
| exon | 489373 | 489440 |
| exon | 489588 | 489699 |
| exon | 489784 | 489835 |
| exon | 490255 | 490350 |
| exon | 490446 | 490604 |
| exon | 491587 | 491688 |
| exon | 491769 | 491867 |
| CDS | 483010 | 483093 |
| CDS | 483161 | 483223 |
| CDS | 483319 | 483441 |
| CDS | 484156 | 484231 |
| CDS | 485183 | 485280 |
| CDS | 486085 | 486440 |
| CDS | 489373 | 489440 |
| CDS | 489588 | 489699 |
| CDS | 489784 | 489835 |
| CDS | 490255 | 490350 |
| CDS | 490446 | 490604 |
| CDS | 491587 | 491688 |
| CDS | 491769 | 491867 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001278 | protein_kinase_binding ATPase activity, coupled to transmembrane movement of substances, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.