PH01000890G0170's details annotation
1.Annotation
ICBR annotation: PHD-finger domain containing protein, putative, expressed
Blast result AT1G79350 : 4.00E-127
Blast annotation: RING/FYVE/PHD zinc finger superfamily protein
2.Location
Scaffold: PH01000890
Strand: -
| Region | Start | End |
| gene | 89995 | 97122 |
| mRNA | 89995 | 97122 |
| exon | 89995 | 90365 |
| exon | 90871 | 90982 |
| exon | 92707 | 92835 |
| exon | 93548 | 93650 |
| exon | 93820 | 93873 |
| exon | 94384 | 94502 |
| exon | 94658 | 94735 |
| exon | 94812 | 94935 |
| exon | 95008 | 97122 |
| CDS | 90334 | 90365 |
| CDS | 90871 | 90982 |
| CDS | 92707 | 92835 |
| CDS | 93548 | 93650 |
| CDS | 93820 | 93873 |
| CDS | 94384 | 94502 |
| CDS | 94658 | 94735 |
| CDS | 94812 | 94935 |
| CDS | 95008 | 95147 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000388 | HMG Transcription_Regulator(from iTAK) cytoskeleton, regulation of actin filament polymerization, Pentose_and_glucuronate_interconversions Metabolism_of_xenobiotics_by_cytochrome_P450 acid-amino acid ligase activity, Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001461 | HMG Transcription_Regulator(from iTAK) base-excision repair, 4 iron, 4 sulfur cluster binding, endonuclease activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13871.5 | Helicase_C_4 | 17 | 75 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.