PH01000890G0740's details annotation
1.Annotation
ICBR annotation: coatomer subunit epsilon, putative, expressed
Blast result AT2G34840 : 2.00E-129
Blast annotation: Coatomer epsilon subunit
2.Location
Scaffold: PH01000890
Strand: -
| Region | Start | End |
| gene | 433613 | 440093 |
| mRNA | 433613 | 440093 |
| exon | 433613 | 434395 |
| exon | 435648 | 435727 |
| exon | 435862 | 436017 |
| exon | 436120 | 436255 |
| exon | 437092 | 437243 |
| exon | 439666 | 439749 |
| exon | 439835 | 440093 |
| CDS | 434302 | 434395 |
| CDS | 435648 | 435727 |
| CDS | 435862 | 436017 |
| CDS | 436120 | 436255 |
| CDS | 437092 | 437243 |
| CDS | 439666 | 439749 |
| CDS | 439835 | 439996 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001472 | Protein_processing_in_endoplasmic_reticulum COPI vesicle coat, membrane coat, endoplasmic reticulum, RLK-Pelle_LysM (from iTAK) Golgi-associated vesicle, structural molecule activity, cell redox homeostasis, vesicle-mediated transport, intracellular protein transport, retrograde vesicle-mediated transport, Golgi to ER, nucleotide_phosphorylation Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001558 | RLK-Pelle_LysM (from iTAK) retrograde vesicle-mediated transport, Golgi to ER, COPI vesicle coat, NAC Transcription_Regulator(from PlantTFDB) magnesium_ion_transport |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04733.13 | Coatomer_E | 4 | 286 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005198 | structural molecule activity |
| GO:0005515 | protein binding |
| GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER |
| GO:0030126 | COPI vesicle coat |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.