Annotation of co-expression genes

PH01000891G0520's details annotation

1.Annotation

ICBR annotation: eukaryotic aspartyl protease domain containing protein, expressed

Blast result AT1G77480 : 3.00E-100
Blast annotation: Eukaryotic aspartyl protease family protein

2.Location

Scaffold: PH01000891
Strand: -

RegionStartEnd
gene361470366210
mRNA361470366210
exon361470361601
exon362708362828
exon363274363332
exon363429363498
exon363595363777
exon363855363993
exon364125364361
exon364437364669
exon365053365170
exon366001366210
CDS361504361601
CDS362708362828
CDS363274363332
CDS363429363498
CDS363595363777
CDS363855363993
CDS364125364361
CDS364437364669
CDS365053365170
CDS366001366158

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001219Jumonji Transcription_Regulator(from iTAK)
NAC Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14543.5TAXi_N55230
PF14541.5TAXi_C270399

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004190aspartic-type endopeptidase activity
GO:0006508proteolysis

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.