PH01000891G0720's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed
Blast result AT5G02540 : 8.10E-72
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000891
Strand: -
| Region | Start | End |
| gene | 471215 | 473869 |
| mRNA | 471215 | 473869 |
| exon | 471215 | 472314 |
| exon | 472407 | 472501 |
| exon | 472567 | 472648 |
| exon | 472845 | 472923 |
| exon | 473020 | 473173 |
| exon | 473275 | 473354 |
| exon | 473473 | 473869 |
| CDS | 472150 | 472314 |
| CDS | 472407 | 472501 |
| CDS | 472567 | 472648 |
| CDS | 472845 | 472923 |
| CDS | 473020 | 473173 |
| CDS | 473275 | 473354 |
| CDS | 473473 | 473612 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 3 | 108 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.