PH01000892G0250's details annotation
1.Annotation
ICBR annotation: hypothetical_protein
Blast result AT2G20562 : 1.70E-09
Blast annotation: -
2.Location
Scaffold: PH01000892
Strand: -
| Region | Start | End |
| gene | 164487 | 165170 |
| mRNA | 164487 | 165170 |
| exon | 164487 | 164828 |
| exon | 164964 | 165170 |
| CDS | 164705 | 164828 |
| CDS | 164964 | 165076 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000530 | RLK-Pelle_LRR-XIV (from iTAK) transmembrane transport, GRAS Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001324 | Valine,_leucine_and_isoleucine_degradation Benzoate_degradation metabolic process, Biosynthesis_of_unsaturated_fatty_acids Fatty_acid_metabolism alpha-Linolenic_acid_metabolism |
| coexpression network | CFinderM001380 | Valine,_leucine_and_isoleucine_degradation RLK-Pelle_LRR-XIV (from iTAK) Benzoate_degradation GRAS Transcription_Regulator(from PlantTFDB) Fatty_acid_metabolism Biosynthesis_of_unsaturated_fatty_acids alpha-Linolenic_acid_metabolism Peroxisome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.