PH01000892G0410's details annotation
1.Annotation
ICBR annotation: TCP family transcription factor, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000892
Strand: +
| Region | Start | End |
| gene | 292881 | 296457 |
| mRNA | 292881 | 296457 |
| exon | 292881 | 296457 |
| CDS | 295084 | 295596 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000070 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-HD-ZIP Transcription_Regulator(from iTAK) Rho GDP-dissociation inhibitor activity, 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol metabolic process, sequence-specific DNA binding, transcription_regulatory_region_sequence-specific_DNA_binding sequence-specific DNA binding transcription factor activity, phosphatidylinositol phosphate kinase activity, regulation of transcription, DNA-dependent, nucleus, Phosphatidylinositol_signaling_system Inositol_phosphate_metabolism Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.