PH01000894G0740's details annotation
1.Annotation
ICBR annotation: TBC domain containing protein, expressed
Blast result AT5G41940 : 4.00E-161
Blast annotation: Ypt/Rab-GAP domain of gyp1p superfamily protein
2.Location
Scaffold: PH01000894
Strand: +
| Region | Start | End |
| gene | 412058 | 418087 |
| mRNA | 412058 | 418087 |
| exon | 412058 | 412717 |
| exon | 414247 | 414382 |
| exon | 414562 | 414611 |
| exon | 415920 | 415973 |
| exon | 416303 | 418087 |
| CDS | 412476 | 412717 |
| CDS | 414247 | 414382 |
| CDS | 414562 | 414611 |
| CDS | 415920 | 415973 |
| CDS | 416303 | 417542 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000745 | GMP synthase (glutamine-hydrolyzing) activity, pyrophosphatase_activity CMGC_GSK (from iTAK) protein-arginine_deiminase_activity |
| coexpression network | CFinderM001109 | RLK-Pelle_LRR-VI-2 (from iTAK) regulation of Rab GTPase activity, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00566.17 | RabGAP-TBC | 371 | 491 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005097 | Rab GTPase activator activity |
| GO:0005622 | intracellular |
| GO:0032313 | regulation of Rab GTPase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.