PH01000895G0010's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G54440 : 7.00E-174
Blast annotation: CLUB
2.Location
Scaffold: PH01000895
Strand: +
| Region | Start | End |
| gene | 1384 | 6829 |
| mRNA | 1384 | 6829 |
| exon | 1384 | 2460 |
| exon | 3094 | 3323 |
| exon | 3456 | 3637 |
| exon | 3896 | 4079 |
| exon | 4208 | 4298 |
| exon | 4808 | 4968 |
| exon | 5271 | 5360 |
| exon | 5787 | 5843 |
| exon | 6156 | 6245 |
| exon | 6365 | 6526 |
| exon | 6732 | 6829 |
| CDS | 2397 | 2460 |
| CDS | 3094 | 3323 |
| CDS | 3456 | 3637 |
| CDS | 3896 | 4079 |
| CDS | 4208 | 4298 |
| CDS | 4808 | 4968 |
| CDS | 5271 | 5360 |
| CDS | 5787 | 5843 |
| CDS | 6156 | 6245 |
| CDS | 6365 | 6526 |
| CDS | 6732 | 6740 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001111 | vacuolar proton-transporting V-type ATPase, V1 domain, C2C2-Dof Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) binding, proton-transporting ATPase activity, rotational mechanism, ATP hydrolysis coupled proton transport, |
| coexpression network | CFinderM001150 | CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases nucleosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.