PH01000898G0620's details annotation
1.Annotation
ICBR annotation: L1P family of ribosomal proteins domain containing protein, expressed
Blast result AT2G42710 : 2.40E-74
Blast annotation: Ribosomal protein L1p/L10e family
2.Location
Scaffold: PH01000898
Strand: -
| Region | Start | End |
| gene | 404170 | 412359 |
| mRNA | 404170 | 412359 |
| exon | 404170 | 404368 |
| exon | 404736 | 404782 |
| exon | 405441 | 405528 |
| exon | 405661 | 405768 |
| exon | 405846 | 405890 |
| exon | 405971 | 406035 |
| exon | 406321 | 406426 |
| exon | 406505 | 406600 |
| exon | 408302 | 408388 |
| exon | 409331 | 412359 |
| CDS | 404357 | 404368 |
| CDS | 404736 | 404782 |
| CDS | 405441 | 405528 |
| CDS | 405661 | 405768 |
| CDS | 405846 | 405890 |
| CDS | 405971 | 406035 |
| CDS | 406321 | 406426 |
| CDS | 406505 | 406600 |
| CDS | 408302 | 408388 |
| CDS | 409331 | 409891 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00687.20 | Ribosomal_L1 | 193 | 386 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0006412 | translation |
| GO:0015934 | large ribosomal subunit |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.