PH01000901G0230's details annotation
1.Annotation
ICBR annotation: choline transporter-related, putative, expressed
Blast result AT3G15380 : 0.00E+00
Blast annotation: Plasma-membrane choline transporter family protein
2.Location
Scaffold: PH01000901
Strand: +
| Region | Start | End |
| gene | 127546 | 134000 |
| mRNA | 127546 | 134000 |
| exon | 127546 | 128457 |
| exon | 128811 | 128946 |
| exon | 129064 | 129174 |
| exon | 129585 | 129730 |
| exon | 130118 | 130301 |
| exon | 130435 | 130508 |
| exon | 130583 | 130696 |
| exon | 130886 | 131242 |
| exon | 131359 | 131619 |
| exon | 132798 | 132922 |
| exon | 132967 | 133025 |
| exon | 133153 | 133211 |
| exon | 133701 | 134000 |
| CDS | 128176 | 128457 |
| CDS | 128811 | 128946 |
| CDS | 129064 | 129174 |
| CDS | 129585 | 129730 |
| CDS | 130118 | 130301 |
| CDS | 130435 | 130508 |
| CDS | 130583 | 130696 |
| CDS | 130886 | 131242 |
| CDS | 131359 | 131619 |
| CDS | 132798 | 132922 |
| CDS | 132967 | 133025 |
| CDS | 133153 | 133211 |
| CDS | 133701 | 133814 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001180 | SNARE_interactions_in_vesicular_transport cysteamine dioxygenase activity, SNAP receptor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04515.11 | Choline_transpo | 322 | 637 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.